Dihydrodipicolinate Reductase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-123   MET-124  11.4 11.3 6.3 -14.5 96.9 99.3 52.4
 ASN-123   MET-124  5.6 6.5 6.3 -14.5 75.4 77.7 2.7
 MET-124   SER-125  5.3 6.1 7.8 9.7 82.4 75.1 19.0
 ASN-123   MET-124  11.4 11.3 6.3 -14.5 96.9 99.3 52.4
 ASN-123   MET-124  5.6 6.5 6.3 -14.5 75.4 77.7 2.7
 MET-124   SER-125  5.3 6.1 7.8 9.7 82.4 75.1 19.0
 SER-125   LEU-126  2.1 2.6 -15.1 -0.9 44.1 49.5 40.5
 LEU-126   GLY-127  4.3 4.8 -3.0 -3.4 53.7 53.9 1.5
 GLY-127   VAL-128  3.7 3.8 0.3 3.6 139.4 132.7 -7.0
 VAL-128   ASN-129  1.1 0.8 -5.5 1.0 44.7 36.6 4.3
 ASN-129   LEU-130  2.5 2.6 -5.0 12.3 55.7 57.2 -7.3
 LEU-130   LEU-131  4.5 4.7 -10.4 1.8 57.1 55.4 16.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-233   GLU-234  7.1 7.0 -2.8 11.4 46.2 50.7 0.8
 GLU-234   ARG-235  4.7 4.2 -12.3 -2.2 107.7 122.9 -1.4
 ARG-235   SER-236  4.3 3.7 5.4 -6.1 100.0 96.2 13.2
 SER-236   ILE-237  1.8 1.6 15.4 5.8 32.6 36.1 57.7
 ILE-237   PHE-238  1.2 1.4 3.3 5.6 61.3 61.9 8.4
 PHE-238   ALA-239  4.1 4.2 -3.9 -3.1 56.1 62.6 33.4
 ALA-239   ASN-240  6.2 6.3 6.7 9.6 80.8 79.0 5.5
 ASN-240   GLY-241  6.4 6.2 -10.2 -4.5 157.5 151.2 -36.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees