Dna-Directed RNA Polymerase
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
TYR-44
GLU-45
14.1
13.8
17.9
-97.4
69.6
76.3
-17.8
GLU-45
MET-46
13.9
14.7
165.9
-1.5
91.4
145.5
-43.3
MET-46
GLY-47
10.3
14.6
134.2
29.0
47.4
96.5
137.1
GLY-47
GLU-48
10.0
18.0
-177.2
0.9
156.2
97.4
-81.8
GLU-48
ALA-49
11.2
20.2
38.2
-31.5
85.8
151.4
-5.8
ALA-49
ARG-50
9.6
20.9
3.1
-26.7
79.3
111.7
-0.6
ARG-50
PHE-51
6.3
17.3
6.9
2.9
14.6
60.2
6.6
PHE-51
ARG-52
6.9
16.9
-10.4
-7.7
124.9
84.3
-5.1
ARG-52
LYS-53
7.9
20.4
36.5
-13.7
89.1
155.2
-6.0
LYS-53
MET-54
6.1
20.2
11.8
-8.5
64.5
98.8
7.8
MET-54
PHE-55
2.7
17.8
39.7
-23.7
8.2
71.3
13.4
PRO-72
LEU-73
13.2
12.7
150.9
23.5
11.9
7.4
130.4
LEU-73
ILE-74
11.7
11.2
21.8
-13.2
59.3
56.9
4.2
ILE-74
THR-75
10.1
10.9
-10.5
15.9
94.6
106.2
-1.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ALA-255
THR-256
12.8
11.4
-12.2
-14.9
121.9
130.6
-14.7
THR-256
ARG-257
15.4
14.1
31.5
-40.1
60.7
72.1
-5.2
ARG-257
ALA-258
13.8
13.2
-169.7
-21.4
144.9
126.5
124.9
ALA-258
GLY-259
11.2
11.5
149.3
141.4
43.5
113.7
-11.2
GLY-259
ALA-260
14.2
9.5
90.8
4.5
52.2
172.7
-39.5
ALA-260
LEU-261
16.0
9.6
-5.2
-30.1
120.5
65.3
-13.7
LEU-261
ALA-262
12.9
6.6
66.1
27.6
29.2
65.6
66.1
ALA-262
GLY-263
11.6
8.9
-63.5
10.4
136.6
71.4
-10.1
GLY-263
ILE-264
14.8
9.9
20.8
0.4
63.9
130.6
0.0
ILE-264
SER-265
14.7
6.8
70.8
25.1
60.5
56.7
73.3
SER-265
PRO-266
11.3
6.3
92.7
12.3
32.1
122.4
-159.3
PRO-266
MET-267
12.1
6.0
17.5
30.7
50.3
112.0
-15.2
MET-267
PHE-268
9.6
9.1
-132.8
-45.2
148.0
131.2
104.8
PHE-268
GLN-269
11.5
11.2
7.8
-22.7
28.9
25.3
-7.9
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees