Ns5 Polymerase
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
THR-264
ARG-265
3.4
3.2
-1.5
-1.5
79.0
81.1
9.7
ARG-265
ALA-266
6.6
6.4
7.4
-0.5
47.0
47.4
27.9
ALA-266
VAL-267
9.2
9.1
14.0
-45.2
111.4
119.9
72.3
GLY-268
LYS-269
14.8
16.5
-119.8
-117.8
150.5
167.0
-1563.0
LYS-269
GLY-270
17.0
15.5
-92.0
-174.0
138.0
125.9
490.9
ASN-275
GLN-276
15.7
14.3
18.7
12.1
77.6
84.9
13.5
GLN-276
GLU-277
13.5
12.8
-22.7
-2.1
163.1
159.8
-154.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ALA-291
THR-292
13.9
14.0
2.4
-29.6
41.9
36.1
-139.6
THR-292
THR-293
16.2
16.1
30.7
0.5
18.1
26.3
188.6
THR-293
TRP-294
14.3
13.4
-26.8
4.9
93.0
94.5
-37.5
TRP-294
HIS-295
12.1
11.6
0.4
-5.9
126.8
132.4
68.1
TRP-294
HIS-295
12.1
11.6
0.4
-5.9
126.8
132.4
68.1
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
TRP-294
HIS-295
12.1
11.6
0.4
-5.9
126.8
132.4
68.1
TRP-294
HIS-295
12.1
11.6
0.4
-5.9
126.8
132.4
68.1
HIS-295
LYS-296
12.3
11.9
-0.9
7.5
76.2
74.9
-16.6
LYS-296
ASP-297
11.4
10.9
11.3
-13.8
176.4
172.1
17.3
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
THR-349
PRO-350
11.5
11.5
-13.1
7.2
84.2
79.8
53.9
PRO-350
PHE-351
7.8
7.8
14.4
-8.1
35.1
38.1
59.4
PHE-351
GLY-352
7.1
7.0
-17.9
-9.1
93.2
90.2
16.0
GLY-352
GLN-353
10.1
9.6
14.6
29.3
58.3
35.9
99.5
GLY-352
GLN-353
10.1
9.6
14.6
29.3
58.3
35.9
99.5
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLY-352
GLN-353
10.1
9.6
14.6
29.3
58.3
35.9
99.5
GLY-352
GLN-353
10.1
9.6
14.6
29.3
58.3
35.9
99.5
GLN-353
GLN-354
9.2
8.7
-16.4
-6.6
77.4
78.4
17.7
GLN-354
ARG-355
5.8
5.4
5.3
-11.1
143.1
131.8
14.6
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
VAL-580
LYS-581
3.3
3.8
0.7
-3.1
61.2
57.9
23.2
LYS-581
VAL-582
1.8
2.3
-3.9
10.0
139.1
141.1
46.1
VAL-582
MET-583
3.2
3.5
7.4
-14.8
51.9
55.7
15.2
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ARG-584
PRO-585
3.5
3.9
-5.1
7.5
55.2
63.0
-86.2
PRO-585
ALA-586
5.3
6.5
27.3
-46.5
99.4
92.2
1.2
ALA-586
ALA-587
6.8
8.6
-32.2
18.0
22.4
52.3
80.5
ALA-587
GLU-588
8.8
11.6
-7.9
18.5
87.5
113.4
-65.3
GLU-588
GLY-589
11.5
14.6
173.8
174.2
58.9
72.6
-33.3
GLY-589
LYS-590
11.4
15.0
14.9
-2.9
3.7
27.5
69.4
LYS-590
THR-591
11.3
12.9
26.7
-15.4
66.0
98.6
1.9
THR-591
VAL-592
8.7
9.2
-4.9
49.8
149.4
128.0
193.4
VAL-592
MET-593
7.1
6.6
-17.2
-1.9
129.9
129.5
-160.5
MET-593
ASP-594
5.1
4.8
-4.8
-3.2
96.8
98.7
32.2
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees