Gtp:amp Phosphotransferase Mitochondrial

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-123   THR-124  3.4 2.2 -22.9 45.1 107.8 105.0 11.3
 THR-124   ALA-125  5.4 2.1 -40.6 -32.8 46.9 60.2 48.5
 ALA-125   ARG-126  4.8 4.2 45.6 -4.7 76.0 93.7 2.6
 ARG-126   TRP-127  5.9 5.8 -1.8 9.8 121.4 123.1 0.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-157   GLN-158  13.1 12.8 7.7 5.3 83.0 85.6 -9.3
 GLN-158   ARG-159  9.4 9.1 -7.8 0.1 25.3 32.3 12.8
 ARG-159   GLU-160  7.4 7.8 -10.9 -8.6 69.9 48.4 15.1
 GLU-160   ASP-161  6.3 6.4 7.1 -22.9 66.6 89.3 -1.4
 ASP-161   ASP-162  3.0 3.8 36.0 -6.0 20.3 30.0 23.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees