Glutamate Receptor 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-106   MET-107  7.8 7.9 -3.9 -0.1 103.9 106.0 -3.4
 MET-107   SER-108  4.1 4.1 -0.5 3.4 27.5 27.0 -21.4
 SER-108   LEU-109  2.6 2.7 2.7 -0.3 86.6 87.7 50.5
 LEU-109   GLY-110  1.7 1.6 -5.6 -4.6 22.7 22.8 130.7
 GLY-110   ILE-111  4.1 4.1 0.6 2.8 87.3 87.5 -42.3
 ILE-111   SER-112  7.4 7.5 -6.5 5.6 115.8 115.8 -33.8
 SER-112   ILE-113  10.2 10.2 6.4 -8.1 85.3 87.3 8.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-215   ASP-216  8.6 8.7 -0.2 -3.6 120.0 117.7 -22.5
 ASP-216   SER-217  5.0 5.1 -0.6 0.5 41.1 41.7 -24.9
 SER-217   LYS-218  3.0 3.2 -6.2 14.8 95.5 96.1 -17.3
 LYS-218   GLY-219  1.4 1.2 -1.9 -7.0 27.0 31.8 134.4
 GLY-219   TYR-220  3.8 3.8 -1.7 -5.7 78.2 79.6 -39.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-253   TRP-254  0.7 0.6 4.2 -3.8 104.0 104.1 -28.7
 TRP-254   TRP-255  3.8 3.5 9.9 -16.5 112.1 112.4 58.7
 TRP-255   TYR-256  4.5 4.3 4.4 -6.0 48.2 51.7 -15.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees