Pyruvate,orthophosphate Dikinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-582   ILE-583  1.6 2.7 -0.2 4.7 123.7 125.2 9.8
 ILE-583   MET-584  2.2 3.7 -10.6 10.0 142.6 139.9 2.6
 MET-584   ALA-585  2.4 3.9 1.6 -20.4 100.9 100.5 27.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-597   LEU-598  7.2 6.8 19.9 -23.7 71.1 76.8 3.0
 LEU-598   LEU-599  4.8 5.2 4.6 16.1 4.4 7.5 79.6
 LEU-599   PRO-600  4.8 4.7 -3.7 6.1 110.5 111.3 -6.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-630   LEU-631  8.9 7.8 -3.9 -9.6 154.6 145.1 -52.2
 LEU-631   PRO-632  8.2 6.5 -1.0 -2.8 117.4 130.2 13.2
 ASN-635   ILE-636  12.1 10.2 -144.4 -59.6 73.1 152.0 453.4
 ILE-636   GLU-637  9.1 10.3 159.9 17.6 73.7 66.3 -150.0
 GLU-637   ASP-638  7.1 7.7 16.8 6.6 128.9 98.5 -26.6
 ASP-638   ILE-639  8.7 9.4 -22.8 -2.9 23.2 31.4 86.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 CYS-644   ALA-645  4.1 4.2 6.4 -0.8 75.4 96.9 15.6
 ALA-645   GLU-646  7.8 7.9 -3.8 10.4 170.1 152.8 24.3
 GLU-646   THR-647  7.5 8.4 -1.6 8.3 121.2 112.6 15.4
 THR-647   GLY-648  5.4 7.2 25.4 -29.4 113.3 130.0 25.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees