3-Deoxy-D-Manno-2-Octulosonic Acid Transferase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  CYS-165   GLN-166  9.6 9.5 -1.4 2.5 98.0 99.6 -87.2  GLN-166   LYS-167  13.3 13.1 -0.3 0.6 19.2 18.0 45.6  LYS-167   GLY-168  13.7 13.6 -17.2 10.6 64.7 63.3 91.0  GLY-168   LYS-169  17.4 17.2 -36.0 30.5 40.6 38.2 300.8  LYS-169   GLY-170  18.6 18.8 -5.0 -4.7 40.4 41.1 297.5  GLY-170   ILE-171  16.1 16.7 58.6 -50.3 153.3 151.6 -417.9  ILE-171   LYS-172  17.1 17.3 -6.0 19.2 49.8 50.3 -288.6  LYS-172   LEU-173  16.3 16.5 0.9 -5.2 154.5 149.7 321.6  LEU-173   LYS-174  15.5 15.4 -2.6 -17.6 49.6 52.8 262.7 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  ILE-249   LEU-250  19.7 20.1 -26.9 -9.5 96.6 91.4 -249.8  LEU-250   LYS-251  16.6 17.0 0.2 2.0 114.7 113.5 39.5  LYS-251   GLU-252  14.9 15.1 4.2 -7.3 64.0 59.4 17.6 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  GLY-257   LYS-258  7.8 7.7 4.6 -4.2 75.7 77.1 -101.9  LYS-258   ILE-259  4.0 4.0 -1.7 -2.6 128.6 130.3 9.2  ILE-259   ALA-260  4.5 4.4 -0.7 -5.9 106.9 106.4 113.6 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  GLU-276   PRO-277  9.6 9.5 -9.0 2.7 141.1 139.9 -114.1  PRO-277   THR-278  7.6 7.6 2.9 -11.1 106.1 104.8 -12.4  THR-278   CYS-279  4.4 4.4 6.4 -3.0 112.2 115.6 -203.8  CYS-279   TRP-280  7.1 6.9 8.8 -12.2 43.6 44.8 230.3 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  GLY-281   ILE-282  5.2 5.2 -8.3 6.1 41.1 43.2 46.2  ILE-282   PRO-283  3.4 3.4 8.6 -8.8 67.7 67.0 86.4  PRO-283   VAL-284  2.1 2.1 2.3 5.8 97.1 95.7 39.7 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  ASP-295   LEU-296  9.6 9.6 6.1 -6.9 43.7 44.4 82.9  LEU-296   LYS-297  8.0 8.1 -5.0 8.9 137.7 138.1 -49.7  LYS-297   GLU-298  9.3 9.5 -0.5 -6.3 78.7 75.9 -18.1 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  LYS-302   GLU-303  7.2 7.3 7.1 -0.5 117.5 112.1 52.3  GLU-303   GLY-304  4.4 4.4 -5.5 8.9 13.7 14.2 -25.3  GLY-304   ALA-305  5.8 5.8 6.4 -10.5 122.9 125.5 41.7 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  GLU-333   LYS-334  8.3 8.3 1.8 -1.9 152.1 149.5 -38.2  LYS-334   SER-335  5.5 5.4 6.9 -8.5 120.1 118.0 -5.2  SER-335   ARG-336  6.5 6.6 -0.1 2.5 58.6 58.4 -94.4 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees