Putative Enzyme Ydif

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 CYS-415   GLY-416  11.3 11.1 2.0 9.0 121.5 121.7 -188.9
 GLY-416   THR-417  12.7 12.6 24.3 -28.0 107.7 103.8 78.1
 THR-417   LEU-418  12.8 12.6 1.5 0.5 158.4 158.9 -90.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-426   ILE-427  19.5 19.2 4.5 -0.3 108.0 108.5 -242.1
 ILE-427   ALA-428  17.0 17.2 16.9 0.7 125.3 119.6 -372.6
 ALA-428   ASP-429  19.1 19.3 -3.9 -8.7 92.4 83.4 74.7
 ASP-429   GLY-430  19.0 18.9 -2.8 5.5 98.9 100.9 33.1
 GLY-430   LYS-431  15.2 15.1 12.9 -9.5 15.9 11.8 247.2
 LYS-431   LEU-432  15.2 15.4 -14.5 3.1 107.1 113.1 20.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-434   VAL-435  17.8 18.0 -0.4 8.7 73.6 71.5 -84.2
 VAL-435   GLN-436  21.6 21.7 -6.5 -2.2 40.6 34.5 176.5
 GLN-436   GLU-437  21.7 21.7 26.2 -23.2 109.1 103.9 -50.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-442   PHE-443  13.1 13.1 13.0 -8.7 73.1 77.3 24.3
 PHE-443   ILE-444  9.6 9.6 7.6 -9.1 0.8 0.8 -9.3
 ILE-444   ARG-445  10.5 10.4 -2.1 6.4 113.8 117.3 -63.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-480   HIS-481  5.0 5.0 -2.3 4.6 96.1 94.1 -3.7
 HIS-481   LEU-482  4.0 3.9 3.4 0.4 53.0 53.5 89.5
 LEU-482   ILE-483  1.7 1.7 4.0 -1.9 46.8 46.4 -122.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-486   PRO-487  9.2 9.2 -8.5 8.0 95.3 97.1 -23.8
 PRO-487   GLY-488  12.4 12.4 -3.9 0.5 110.3 108.2 -64.0
 GLY-488   VAL-489  15.3 15.3 -4.0 4.0 153.8 153.0 -26.5
 VAL-489   ASP-490  13.3 13.3 -9.4 7.6 134.1 130.8 -31.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-510   LEU-511  8.1 8.4 7.6 -6.2 97.0 97.1 -20.3
 ASP-513   GLU-514  6.3 6.7 7.0 -11.4 104.0 103.6 135.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees