Uridylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-161   LEU-162  6.7 6.8 6.0 -6.5 124.0 123.1 -11.2
 LEU-162   LYS-163  4.5 4.5 -3.3 6.1 70.6 68.8 -2.4
 LYS-163   ALA-164  3.5 3.8 2.7 -8.3 142.5 146.1 49.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-186   LEU-187  8.0 8.1 -6.7 -1.5 43.9 44.1 55.2
 LEU-187   THR-188  6.1 6.2 -9.7 5.7 55.8 55.4 29.0
 THR-188   TYR-189  3.7 3.9 8.8 -9.2 91.1 92.7 26.3
 TYR-189   SER-190  2.4 2.4 12.6 -5.0 125.8 127.6 -23.1
 SER-190   GLU-191  4.6 4.9 -18.6 22.8 112.4 120.9 57.3
 GLU-191   VAL-192  7.4 7.6 -7.0 3.2 133.2 128.0 -22.3
 VAL-192   LEU-193  7.3 7.2 9.2 -14.9 115.2 115.3 38.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees