Deoxynucleoside Monophosphate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  VAL-28   LYS-29  7.8 7.5 -3.8 2.4 46.0 48.0 81.6  LYS-29   TYR-30  4.5 4.2 15.3 -9.0 101.9 104.9 8.2  TYR-30   GLN-31  2.5 2.3 -8.4 0.4 60.3 59.4 22.2 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  TYR-160   LEU-161  10.3 10.1 7.2 -3.4 92.5 91.1 35.0  LEU-161   ASP-162  13.9 13.7 11.9 -20.9 156.6 155.8 62.3  ASP-162   LYS-163  14.2 14.0 9.7 -19.9 123.4 116.8 111.9  LYS-163   PHE-164  13.0 12.7 -10.7 -9.8 114.9 123.1 -46.9  PHE-164   ASN-165  15.4 14.0 20.5 17.6 123.0 113.3 -437.0  ASN-165   SER-166  18.1 17.3 -19.0 -18.2 20.9 20.0 496.0  SER-166   GLY-167  15.9 16.1 -169.8 -174.4 68.8 89.0 -151.4  GLY-167   TYR-168  17.1 16.8 28.0 -18.0 83.3 82.1 -50.4  TYR-168   ASP-169  14.2 14.1 2.8 6.1 38.0 37.3 156.7 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  TYR-171   ILE-172  9.1 8.9 -4.7 5.3 58.0 58.0 -7.0  ILE-172   VAL-173  6.7 6.5 9.6 -5.1 97.3 97.5 24.3  VAL-173   PRO-174  3.4 3.3 -14.7 9.8 75.7 79.0 31.2  PRO-174   ASP-175  4.9 5.2 6.0 -5.0 116.9 116.5 -53.1  ASP-175   THR-176  4.8 5.1 1.5 11.6 152.9 157.5 -202.9 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees