Nad Dependent Epimerase/dehydratase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-75   LEU-76  2.9 3.1 1.1 -3.3 146.6 145.8 27.1
 LEU-76   ALA-77  5.7 5.9 3.9 -4.0 120.1 119.4 -8.1
 ALA-77   ALA-78  5.9 6.1 -5.7 1.3 29.4 30.3 -0.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-95   MET-96  4.6 4.5 0.5 -0.8 110.1 108.6 12.4
 MET-96   THR-97  6.3 6.2 -0.2 -0.3 22.8 22.8 1.7
 THR-97   SER-98  8.3 8.2 -0.1 -0.2 41.9 41.0 11.9
 SER-98   LEU-99  5.4 5.3 0.1 -0.3 101.7 101.6 26.1
 LEU-99   LEU-100  3.9 3.7 1.2 -0.9 116.0 115.8 -11.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees