Pyruvate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-86   PRO-87  4.5 4.6 -17.3 -1.0 105.6 84.1 -16.7
 PRO-87   GLU-88  0.8 1.6 73.5 -12.8 36.8 32.8 144.2
 GLU-88   ILE-89  3.5 4.2 -19.4 23.9 85.3 90.5 -25.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-174   ARG-175  14.5 14.7 -5.6 -9.5 40.5 51.3 19.7
 ARG-175   GLY-176  12.7 12.5 18.7 -26.6 72.5 74.0 -20.2
 GLY-176   VAL-177  8.9 8.7 7.4 -4.7 120.0 131.6 4.2
 VAL-177   ASN-178  7.8 7.6 11.2 4.6 93.7 95.2 23.2
 ASN-178   LEU-179  5.1 5.2 33.4 -18.1 109.6 105.9 -2.1
 LEU-179   PRO-180  6.5 7.0 -4.2 -0.3 75.5 58.4 -37.9
 PRO-180   GLY-181  5.5 6.4 -161.4 178.9 87.7 90.5 24.4
 GLY-181   CYS-182  8.8 10.1 29.3 -43.1 36.1 21.5 5.2
 CYS-182   ASP-183  9.7 10.0 -9.3 9.7 139.2 129.4 10.9
 ASP-183   VAL-184  9.7 10.2 -6.3 31.7 133.7 140.9 53.1
 VAL-184   ASP-185  7.2 7.7 60.5 -53.0 41.7 31.5 16.7
 ASP-185   LEU-186  7.2 8.5 -57.2 39.6 130.5 141.3 -34.6
 LEU-186   PRO-187  4.1 5.3 16.6 -12.0 60.2 59.7 -23.6
 PRO-187   ALA-188  3.3 4.3 13.4 -5.7 111.9 113.5 -14.7
 ALA-188   VAL-189  4.6 5.1 -15.1 9.4 115.1 100.6 33.7
 VAL-189   SER-190  3.8 3.9 26.7 -4.2 54.7 61.8 28.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees