Dihydrodipicolinate Synthase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-12   LEU-13  7.4 7.5 -4.8 6.4 114.6 115.9 105.4
 LEU-13   ILE-14  6.0 6.0 -2.5 3.9 137.2 136.6 -82.0
 ILE-14   THR-15  7.4 7.4 -8.0 8.1 64.2 63.6 -5.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-31   LYS-32  4.5 4.5 5.6 -4.1 64.6 64.7 -76.7
 LYS-32   ARG-33  6.3 6.3 -1.0 0.4 55.4 56.0 65.5
 ARG-33   GLN-34  6.1 6.0 2.7 -3.2 82.0 81.8 44.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-41   VAL-42  4.7 4.8 1.2 2.7 32.3 32.6 312.1
 VAL-42   VAL-43  4.6 4.6 -1.1 0.7 85.7 84.8 -58.9
 VAL-43   PRO-44  8.1 8.1 1.3 1.3 61.8 61.0 160.0
 PRO-44   VAL-45  9.5 9.5 0.9 -5.4 74.8 75.1 35.5
 VAL-45   GLY-46  12.8 12.7 1.2 11.0 83.7 84.9 451.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-76   VAL-77  4.2 4.1 4.1 -3.6 135.4 134.5 -38.0
 VAL-77   LEU-78  6.4 6.4 -1.5 1.2 90.8 92.1 101.2
 LEU-78   ALA-79  9.6 9.6 -2.4 2.3 52.5 50.9 -63.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-255   ILE-256  6.3 6.3 -0.6 0.9 45.5 43.8 -6.6
 ILE-256   LYS-257  4.6 4.6 1.2 -0.6 93.5 92.7 13.6
 LYS-257   THR-258  6.1 6.2 0.9 -0.6 35.9 37.7 -149.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-269   GLU-270  11.0 11.0 -0.6 -8.5 89.0 89.7 142.6
 GLU-270   PHE-271  13.9 13.7 0.2 1.0 60.0 57.4 100.7
 PHE-271   ARG-272  14.6 14.6 3.4 -4.2 80.4 78.3 -15.6
 ARG-272   LEU-273  18.0 18.0 1.8 -0.4 122.2 122.4 -48.0
 LEU-273   PRO-274  20.0 20.0 0.1 1.6 52.2 52.2 -187.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-280   GLU-281  7.2 7.1 -1.7 4.3 94.0 93.4 147.7
 GLU-281   ASN-282  5.6 5.8 2.1 -3.9 150.8 152.3 -101.3
 ASN-282   PHE-283  6.0 6.2 -2.5 1.8 60.8 61.4 140.4
 PHE-283   ALA-284  4.0 4.1 -2.2 1.5 108.2 106.7 139.7
 ALA-284   LYS-285  1.0 1.1 -1.6 3.8 70.5 69.2 -99.0
 LYS-285   ILE-286  3.6 3.7 -1.9 -1.6 20.9 21.0 17.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-291   LYS-292  8.6 8.5 0.1 -0.1 67.9 68.3 50.0
 LYS-292   TYR-293  11.1 10.9 2.7 -7.9 8.4 7.7 -396.6
 TYR-293   LYS-294  10.2 10.2 7.5 -8.3 68.1 69.5 -16.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees