Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-108   LEU-109  4.0 3.8 -6.7 4.6 53.8 52.8 3.1
 LEU-109   GLY-110  0.4 0.7 -5.0 24.1 127.9 126.1 49.9
 GLY-110   ILE-111  3.2 3.5 -13.8 -2.8 53.8 53.5 35.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-215   ASP-216  8.7 9.0 0.6 1.7 142.0 143.6 0.1
 ASP-216   SER-217  5.6 5.9 -1.9 -6.2 106.1 105.9 -8.5
 SER-217   LYS-218  1.9 2.3 -4.5 -18.7 80.3 68.1 47.5
 LYS-218   GLY-219  2.3 2.0 14.6 9.8 64.6 52.2 47.2
 GLY-219   TYR-220  4.9 4.8 15.0 -0.2 75.9 77.2 0.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees