Abc-Type Fe3+ Transport System, Periplasmic Component

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Abc-Type Fe3+ Transport System, Periplasmic Component
  Conformer 1
(PDB)
6hhb (A)
  Conformer 2
(PDB)
6fjl (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 285 0.19   32 - 156   185 - 211   218 - 233   240 - 247   255 - 257   263 - 368
2 52 0.22   157 - 184   212 - 217   234 - 239   248 - 254   258 - 262

Sequence


           ________________________________________________________________________________________________________________________ 
 6hhb(A) : ATVAPDTRSLDEIYQSALKEGGTVTVYAGGDVQSQQAGFKQAFENRFPGIKLNVIVDYSKYHDARIDNQLATDTLIPDVVQLQTVQDFPRWKKQGVLLNYKPVGWDKVYPEFRDADGAWI 
         :                                                                                                                          
 6fjl(A) : ATVAPDTRSLDEIYQSALKEGGTVTVYAGGDVQSQQAGFKQAFENRFPGIKLNVIVDYSKYHDARIDNQLATDTLIPDVVQLQTVQDFPRWKKQGVLLNYKPVGWDKVYPEFRDADGAWI 
           ________________________________________________________________________________________________________________________ 

           ______156_________________________184________________________211___217_____________233___239____246_____254_____262_____ 
 6hhb(A) : GAYVIAFSNLVNTQLLNEKSWPREANDYLRPDLKGNLILAYPNDDDAVLFWYKQIVDKYGWEFVEKLQEQDPVYVRGTNVPGAQITTGKYSATFTSSGALVPAAGSVTRFVLPKTDPFVS 
         :                                                                                                                          
 6fjl(A) : GAYVIAFSNLVNTQLLNEKSWPREANDYLRPDLKGNLILAYPNDDDAVLFWYKQIVDKYGWEFVEKLQEQDPVYVRGTNVPGAQITTGKYSATFTSSGALVPAAGSVTRFVLPKTDPFVS 
           ______156_________________________184________________________211___217_____________233___239____246_____254_____262_____ 

           _________________________________________________________________________________________________________                
 6hhb(A) : WAQRAAIFKQAKHPESAKLYLSWLLDPQTQTQVSRMWSVRTDVAPPAGYKHIWEYSNTRPQAFADFMSDRGAVERFRAQMSLYVGEAKGDPTPGWLGLHPEVPLA                
         :                                                                                                                          
 6fjl(A) : WAQRAAIFKQAKHPESAKLYLSWLLDPQTQTQVSRMWSVRTDVAPPAGYKHIWEYSNTRPQAFADFMSDRGAVERFRAQMSLYVGEAKGDPTPGWLGLHPEVPLA                
           _________________________________________________________________________________________________________                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
1.9
Translation
(A)
0.0
Closure
(%)
59.0
Bending Residues
( green )
  156 - 157
  184 - 185
  211 - 212
  217 - 218
  233 - 234
  239 - 240
  246 - 251
  254 - 258
  262 - 264
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download