Actin-Related Protein 3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin-Related Protein 3
  Conformer 1
(PDB)
1k8k (A)
  Conformer 2
(PDB)
1u2v (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 353 0.46   5 - 205   208 - 210   231 - 231   233 - 253   274 - 416
2 43 0.48   206 - 207   211 - 230   232 - 232   254 - 273

Sequence


           ________________________________________________________________________________________________________________________ 
 1k8k(A) : **GRLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKEvMKGVDDLDFFIGDEAIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMF 
         :                                                                                                                          
 1u2v(A) : MAGRLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKEvMKGVDDLDFFIGDEAIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMF 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________204___210_________________230__________________251 
 1k8k(A) : ESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSK 
         :                                                                                                                          
 1u2v(A) : ESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSK 
           ______________________________________________________________________204___210_________________230__________________251 

           ___________________273__________________________________________________________________________________________________ 
 1k8k(A) : WIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSkPKPIDVQVITHHMQRY 
         :                                                                                                                          
 1u2v(A) : WIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEEL-kPKPIDVQVITHHMQRY 
           ___________________273__________________________________________________________________________________________________ 

           ___________________________________________                                                                              
 1k8k(A) : AVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVFGVMS                                                                              
         :                                                                                                                          
 1u2v(A) : AVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVFGVMS                                                                              
           ___________________________________________                                                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.5
Translation
(A)
0.1
Closure
(%)
85.1
Bending Residues
( green )
  204 - 208
  210 - 211
  230 - 233
  251 - 254
  273 - 274
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download