Actin-5c

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin-5c
  Conformer 1
(PDB)
2hf4 (A)
  Conformer 2
(PDB)
1nwk (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 329 0.83   8 - 35   68 - 369
2 20 0.71   36 - 67

Sequence


           ________________________________35____________________67________________________________________________________________ 
 2hf4(A) : DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRkDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPA 
         :                                                                                                                          
 1nwk(A) : ****TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPR--sYVGDEAQSKRGILTLKYPIE-gIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPA 
           ________________________________35____________________67________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2hf4(A) : MYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTEEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELKDGQVITIG 
         :                                                                                                                          
 1nwk(A) : MYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIG 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2hf4(A) : NERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH 
         :                                                                                                                          
 1nwk(A) : NERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH 
           ________________________________________________________________________________________________________________________ 

           ____                                                                                                                     
 2hf4(A) : RKCF                                                                                                                     
         :                                                                                                                          
 1nwk(A) : ****                                                                                                                     
           ____                                                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
13.7
Translation
(A)
0.9
Closure
(%)
59.8
Bending Residues
( green )
  35 - 37
  67 - 68
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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