Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adenylate Kinase
  Conformer 1
(PDB)
4ake (A)
  Conformer 2
(PDB)
1aky  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 110 1.74   3 - 28   82 - 117   160 - 212
2 24 1.41   29 - 31   61 - 81
3 42 0.81   118 - 159
4 29 1.0   32 - 60

Sequence


           ____________________________28_31___________________________60____________________81____________________________________ 
 4ake(A) : **MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQED-CRNGFLLDGFPRTIPQADAM----KEAGINVDYVLEFDVPD 
         :                                                                                                                          
 1aky    : ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDD 
           ____________________________32_35___________________________64____________________86____________________________________ 

           116_______________________________________158__________________________________________________________                  
 4ake(A) : ELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG**                  
         :                                                                                                                          
 1aky    : ELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTG-----IWAGVDASQPPATVWADILNKLGKN                  
           125_______________________________________167__________________________________________________________                  

Morph

Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 17.9 0.0 82.7   28 - 29   81 - 82 Bending Region Analysis
1 3 45.9 -0.1 98.4   116 - 122   158 - 162 Bending Region Analysis
4 2 47.8 0.3 93.7   31 - 33   60 - 61 Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

Download and extract PyMOL PML script file Download