Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adenylate Kinase
  Conformer 1
(PDB)
4ake (A)
  Conformer 2
(PDB)
1zin  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 171 4.78   3 - 29   63 - 212
2 33 1.17   30 - 62

Sequence


           ___________________________29_____________________________60____________________________________________________________ 
 4ake(A) : MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMK----EAGINVDYVLEFDVPDELI 
         :                                                                                                                          
 1zin    : MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVL 
           ___________________________29_____________________________60____________________________________________________________ 

           _______________________________________________________________________________________________________                  
 4ake(A) : VDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRL-VEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG****                  
         :                                                                                                                          
 1zin    : MERLTGRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEATVANRLEVNMKQMK-PLVDFYEQKGYLRN-----INGEQDMEKVFADIRELLGGLAR                  
           _______________________________________________________________________________________________________                  

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
55.6
Translation
(A)
1.5
Closure
(%)
88.3
Bending Residues
( green )
  29 - 30
  60 - 63
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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