Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adenylate Kinase
  Conformer 1
(PDB)
1zak (A)
  Conformer 2
(PDB)
4ake (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 128 2.05   8 - 35   68 - 122   162 - 207
2 32 1.09   36 - 67
3 39 2.89   123 - 161

Sequence


           _______________________________35_____________________________66_____________________________________________________122 
 1zak(A) : ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELL 
         :                                                                                                                          
 4ake(A) : ***MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCR-NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELI 
           _______________________________30_____________________________61_____________________________________________________116 

           ________________________________________161____________________________________________________________________          
 1zak(A) : VERVVGRRLDPVTGKIYHLKYSPPENE---EIASR-LTQRFDDTEEKVKLRLETYYQNIESLLSTY-------ENIIVKVQGDATVDAVFAKIDELLGSILEKKNEMVSST          
         :                                                                                                                          
 4ake(A) : VDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG*************          
           ________________________________________159____________________________________________________________________          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
56.0
Translation
(A)
0.8
Closure
(%)
98.7
Bending Residues
( green )
  35 - 36
  66 - 68
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
38.6
Translation
(A)
0.5
Closure
(%)
91.8
Bending Residues
( green )
  122 - 123
  161 - 162
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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