Amidase Operon

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Amidase Operon
  Conformer 1
(PDB)
1pea  
  Conformer 2
(PDB)
1qo0 (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 238 0.53   14 - 135   228 - 230   247 - 345   350 - 363
2 112 0.72   136 - 227   231 - 246   346 - 349

Sequence


           ________________________________________________________________________________________________________________________ 
 1pea    : *PLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYEGFEYSPNIVYGGPAPNQ 
         :                                                                                                                          
 1qo0(A) : RPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYEGFEYSPNIVYGGPAPNQ 
           ________________________________________________________________________________________________________________________ 

           ______135_________________________________________________________________________________________227________________246 
 1pea    : NSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEAEVAKMESDV 
         :                                                                                                                          
 1qo0(A) : NSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEAEVAKMESDV 
           ______135_________________________________________________________________________________________227________________246 

           ________________________________________________________________________________________________345_349_________________ 
 1pea    : AEGQVVVAPYFSSIDTPASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQAAGNWRVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQSPEPIRPDPY 
         :                                                                                                                          
 1qo0(A) : AEGQVVVAPYFSSIDTPASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQAAGNWRVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQSPEPIRPDPY 
           ________________________________________________________________________________________________345_349_________________ 

           _____________                                                                                                            
 1pea    : VVVHNLDDW****                                                                                                            
         :                                                                                                                          
 1qo0(A) : VVVHNLDDWSASM                                                                                                            
           _____________                                                                                                            

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.0
Translation
(A)
-0.7
Closure
(%)
88.3
Bending Residues
( green )
  135 - 136
  227 - 231
  246 - 247
  345 - 347
  349 - 350
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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