Argininosuccinate Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Argininosuccinate Synthetase
  Conformer 1
(PDB)
1kh1 (B)
  Conformer 2
(PDB)
1kh2 (D)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 263 0.32   28 - 35   60 - 97   128 - 132   172 - 391
2 111 0.47   5 - 27   36 - 59   98 - 127   133 - 171

Sequence


           _________________________27______________________________59____________________________________97_______________________ 
 1kh1(B) : MKIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQGEEVEEAREKALRTGASKAIALDLKEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGN 
         :                                                                                                                          
 1kh2(D) : MKIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQGEEVEEAREKALRTGASKAIALDLKEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGN 
           _________________________27______________________________59____________________________________97_______________________ 

           ____127__132_______________________________171__________________________________________________________________________ 
 1kh1(B) : DQVRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPpYSMDANLLHISYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAALLQRLNEI 
         :                                                                                                                          
 1kh2(D) : DQVRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPpYSMDANLLHISYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAALLQRLNEI 
           ____127__132_______________________________171__________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1kh1(B) : GGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQRDMLSPKYAELVYYGFWYAPEREALQAYFDHVARSVTGVARLKLYKGNVYVVGRKAPKSLYRQD---g 
         :                                                                                                                          
 1kh2(D) : GGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQRDMLSPKYAELVYYGFWYAPEREALQAYFDHVARSVTGVARLKLYKGNVYVVGRKAPKSLYRQDLVSg 
           ________________________________________________________________________________________________________________________ 

           _________________________                                                                                                
 1kh1(B) : YDQKDAEGFIKIQALRLRVRALVER                                                                                                
         :                                                                                                                          
 1kh2(D) : YDQKDAEGFIKIQALRLRVRALVER                                                                                                
           _________________________                                                                                                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.7
Translation
(A)
-0.1
Closure
(%)
100.0
Bending Residues
( green )
  27 - 36
  59 - 62
  97 - 98
  127 - 128
  132 - 133
  171 - 174
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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