Bacteriophytochrome

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Bacteriophytochrome
  Conformer 1
(PDB)
4q0j (A)
  Conformer 2
(PDB)
5c5k (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 335 2.54   9 - 325   445 - 473   475 - 475
2 143 0.78   326 - 444   474 - 474   476 - 500

Sequence


           ________________________________________________________________________________________________________________________ 
 4q0j(A) : SMSRDPLPFFPPLYLGGPEITTENCEREPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWPALQAALPPGCPDALQYRATLDWP--gHLSLTVHRVG 
         :                                                                                                                          
 5c5k(A) : *******PFFPPLYLGGPEITTENCEREPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWPALQAALPPGCPDALQYRATLDWPAAGHLSLTVHRVG 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4q0j(A) : ELLILEFEPTE----tGPHALRNAMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQARALYTRHLLRLTADTRAAAVPLDPVLN 
         :                                                                                                                          
 5c5k(A) : ELLILEFEPTEAWDSTGPHALRNAMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQARALYTRHLLRLTADTRAAAVPLDPVLN 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________________________325__________________________________ 
 4q0j(A) : PQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVGGQLWGLIACHHQTPYVLPPDLRTTLEYLGRLLSLQVQVKEAADVAAFRQSLREHHARVALAAAHSLSPHDTLSDPALDL 
         :                                                                                                                          
 5c5k(A) : PQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVGGQLWGLIACHHQTPYVLPPDLRTTLEYLGRLLSLQVQVKEAADVAAFRQSLREHHARVALAAAHSLSPHDTLSDPALDL 
           ___________________________________________________________________________________325__________________________________ 

           __________________________________________________________________________________444___________________________________ 
 4q0j(A) : LGLMRAGGLILRFEGRWQTLGEVPPAPAVDALLAWLETQPGALVQTDALGQLWPAGADLAPSAAGLLAISVG--wSECLVWLRPELRLEVAWGGATPDQAKDDLGPRHSFDTYLEEKRGY 
         :                                                                                                                          
 5c5k(A) : LGLMRAGGLILRFEGRWQTLGEVPPAPAVDALLAWLETQPGALVQTDALGQLWPAGADLAPSAAGLLAISVGEGWSECLVWLRPELRLEVAWGG------kDDLGPRHSWDTYLEEKRGY 
           __________________________________________________________________________________444___________________________________ 

           _______________________                                                                                                  
 4q0j(A) : AEPWHPGEIEEAQDLRDTLTGAL                                                                                                  
         :                                                                                                                          
 5c5k(A) : AEPWHPGEIEEAQDLRDTLTGAL                                                                                                  
           _______________________                                                                                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
29.5
Translation
(A)
0.2
Closure
(%)
88.3
Bending Residues
( green )
  325 - 326
  444 - 477
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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