Benzoate-Coenzyme A Ligase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Benzoate-Coenzyme A Ligase
  Conformer 1
(PDB)
2v7b (A)
  Conformer 2
(PDB)
4eat (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 392 1.52   24 - 429
2 89 2.98   430 - 526

Sequence


           ________________________________________________________________________________________________________________________ 
 2v7b(A) : ******LFNFAAYLFRLNETRAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVT 
         :                                                                                                                          
 4eat(A) : VTPPPEKFNFAEHLLQTNRVRPDKTAFVDDISSLSFAQLEAQTRQLAAALRAIGVKREERVLLLMLDGTDWPVAFLGAIYAGIVPVAVNTLLTADDYAYMLEHSRAQAVLVSGALHPVLK 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2v7b(A) : QALESAgCQL---IVSQPlAPL------FEELIDAAAPAAKAAATGCDDIAFWLYS-----kPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAI 
         :                                                                                                                          
 4eat(A) : AALTKSDHEVQRVIVSRPAAPLEPGEVDFAEFVGAHAPLEKPAATQADDPAFWLYSSGSTGRPKGVVHTHANPYWTSELYGRNTLHLREDDVCFSAAKLFFAYGLGNALTFPMTVGATTL 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2v7b(A) : LMAERPTADAIFARLVEH----RPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRDEAGH 
         :                                                                                                                          
 4eat(A) : LMGERPTPDAVFKRWLGGVGGVKPTVFYGAPTGYAGMLAAPNLPSRDQVALRLASSAGEALPAEIGQRFQRHFGLDIVDGIGSTEMLHIFLSNLPDRVRYGTTGWPVPGYQIELRGDGGG 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________425__________________________________________________________________ 
 2v7b(A) : AVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLK----yVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPSEILAE-E 
         :                                                                                                                          
 4eat(A) : PVADGEPGDLYIHGPSSATMYWGNRAKSRDTFQGGWTKSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIEATLVQHPGVLEAAVVGVADEHGLTKPKAYVVPR----PGQTLSETE 
           ___________________________________________________419__________________________________________________________________ 

           __________________________________________                                                                               
 2v7b(A) : LKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE***                                                                               
         :                                                                                                                          
 4eat(A) : LKTFIKDRLAPYKYPRSTVFVAELPKTATGKIQRFKLREGVL                                                                               
           __________________________________________                                                                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
146.4
Translation
(A)
-1.3
Closure
(%)
55.5
Bending Residues
( green )
  425 - 430
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download