Benzoylformate Decarboxylase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Benzoylformate Decarboxylase
  Conformer 1
(PDB)
3f6b (X)
  Conformer 2
(PDB)
4gm0 (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 493 0.14   8 - 457   478 - 520
2 20 0.13   458 - 477

Sequence


           ________________________________________________________________________________________________________________________ 
 3f6b(X) : ASVHGTTYELLRRQGIDTVFGNPGSNELPFLKDFPEDFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRP 
         :                                                                                                                          
 4gm0(A) : ASVHGTTYELLRRQGIDTVFGNPGSNELPFLKDFPEDFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRP 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3f6b(X) : LVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCP 
         :                                                                                                                          
 4gm0(A) : LVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCP 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3f6b(X) : FPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAARAPMGDAIVADIGAMASALANLVEESSRQLPTAAPEPAKVDQDAGRLHPETVFDT 
         :                                                                                                                          
 4gm0(A) : FPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAARAPMGDAIVADIGAMASALANLVEESSRQLPTAAPEPAKVDQDAGRLHPETVFDT 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________________________________456__________________477____ 
 3f6b(X) : LNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVPGLDVPGI 
         :                                                                                                                          
 4gm0(A) : LNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGNGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVPGLDVPGI 
           ____________________________________________________________________________________________456__________________477____ 

           _____________________________________________                                                                            
 3f6b(X) : DFRALAKGYGVQALKADNLEQLKGSLQEALSAKGPVLIEVSTVSP                                                                            
         :                                                                                                                          
 4gm0(A) : DFRALAKGYGVQALKADNLEQLKGSLQEALSAKGPVLIEVSTVSP                                                                            
           _____________________________________________                                                                            

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
2.5
Translation
(A)
0.0
Closure
(%)
84.5
Bending Residues
( green )
  456 - 458
  477 - 478
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download