Beta-Actin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Beta-Actin
  Conformer 1
(PDB)
1hlu (A)
  Conformer 2
(PDB)
1j6z (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 208 1.0   70 - 75   108 - 109   139 - 339
2 153 1.94   7 - 69   76 - 107   110 - 138   340 - 368

Sequence


           __________________________________________________________________69___75_____________________________107_______________ 
 1hlu(A) : DDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEgIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 
         :                                                                                                                          
 1j6z(A) : **ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEgIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQI 
           __________________________________________________________________69___75_____________________________107_______________ 

           _____________138________________________________________________________________________________________________________ 
 1hlu(A) : MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYEL 
         :                                                                                                                          
 1j6z(A) : MFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYEL 
           _____________138________________________________________________________________________________________________________ 

           ______________________________________________________________________________________________339_______________________ 
 1hlu(A) : PDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 
         :                                                                                                                          
 1j6z(A) : PDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEY 
           ______________________________________________________________________________________________339_______________________ 

           _____________                                                                                                            
 1hlu(A) : DESGPSIVHRKCF                                                                                                            
         :                                                                                                                          
 1j6z(A) : DEAGPSIVHR***                                                                                                            
           _____________                                                                                                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
13.0
Translation
(A)
0.1
Closure
(%)
63.0
Bending Residues
( green )
  69 - 71
  75 - 76
  107 - 110
  138 - 139
  339 - 340
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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