Autolysin E

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Autolysin E
  Conformer 1
(PDB)
6fxo (A)
  Conformer 2
(PDB)
6fxp (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 184 1.85   3 - 87   89 - 90   92 - 121   123 - 123   164 - 229
2 43 1.75   88 - 88   91 - 91   122 - 122   124 - 163

Sequence


           _____________________________________________________________________________________82________________________________1 
 6fxo(A) : ****AAELIKYNQTGMTLNQVAQIQAGLQYKPQVQ-RVPGKWTDANFNDVKHAMDTKRLAQDPALKYQFLRLDQPQNISIDKINQFLKGKGVLENQGAAFNKAAQMYGINEVYLISHALL 
         :                                                                                                                          
 6fxp(A) : AFKHVKSDIKIEKLNVTLNDAAKKQINNYTSQQVSNKKNDAWRDASATEIKSAMDSGTFIDNEKQKYQFLDLSKYQGIDKNRIKCMLVDRPTLLKHTDDFLKAAKDKHVNEVYLISHALL 
           _____________________________________________________________________________________87________________________________1 

           17________________________________________________163___________________________________________________________________ 
 6fxo(A) : ETGNGTSQLAKGt-----KYHNVFGIAAYDNDPLREGIKYAKQAGWDTVSKAIVGGAKFIGNSYVKA-GQNTLYKMRWNPAHPGTHQYATDVDWANINAKIIKGYYDKIGEVGKYFDIPQ 
         :                                                                                                                          
 6fxp(A) : ETGAVKSELANGVEIDGKKYYNFYGVGALDKDPIKTGAEYAKKHGWDTPEKAISGGADFIHKHFLSSTDQNTLYSMRWNPKNPGEHQYATDIKWAESNATIIADFYKNMKTEGKYFKYFV 
           22________________________________________________173___________________________________________________________________ 

           __________                                                                                                               
 6fxo(A) : YK********                                                                                                               
         :                                                                                                                          
 6fxp(A) : YKDDSKHLNK                                                                                                               
           __________                                                                                                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
22.4
Translation
(A)
0.6
Closure
(%)
40.7
Bending Residues
( green )
  82 - 92
  117 - 124
  163 - 164
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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