Atp Synthase Subunit Beta

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp Synthase Subunit Beta
  Conformer 1
(PDB)
1h8e (E)
  Conformer 2
(PDB)
1e1q (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 287 0.67   11 - 132   151 - 153   173 - 333   353 - 355
2 163 0.95   133 - 150   154 - 172   334 - 352   356 - 462

Sequence


           _______________________________________________________________________________________________________________________1 
 1h8e(E) : TTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEM-- 
         :                                                                                                                          
 1e1q(E) : TTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSV 
           _______________________________________________________________________________________________________________________1 

           30_________________150___________________172____________________________________________________________________________ 
 1h8e(E) : eQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG 
         :                                                                                                                          
 1e1q(E) : EQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG 
           30_________________150___________________172____________________________________________________________________________ 

           _________________________________________________________________________________332_________________352________________ 
 1h8e(E) : QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHY 
         :                                                                                                                          
 1e1q(E) : QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHY 
           _________________________________________________________________________________332_________________352________________ 

           __________________________________________________________________________________________________________               
 1h8e(E) : DVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIE**********               
         :                                                                                                                          
 1e1q(E) : DVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA               
           __________________________________________________________________________________________________________               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.5
Translation
(A)
0.7
Closure
(%)
42.5
Bending Residues
( green )
  130 - 133
  150 - 151
  153 - 154
  172 - 181
  332 - 334
  352 - 353
  355 - 356
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download