B-Raf Proto-Oncogene Serine/threonine-Protein Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name B-Raf Proto-Oncogene Serine/threonine-Protein Kinase
  Conformer 1
(PDB)
3c4c (A)
  Conformer 2
(PDB)
3c4c (B)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 228 1.09   451 - 483   505 - 717
2 21 1.55   484 - 504

Sequence


           _________________________________483__________________504_______________________________________________________________ 
 3c4c(A) : DDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYL 
         :                                                                                                                          
 3c4c(B) : DDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYL 
           _________________________________483__________________504_______________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3c4c(A) : HAKSIIHRDLKSNNIFLHEDNTVKIGDFGsGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKKRDER 
         :                                                                                                                          
 3c4c(B) : HAKSIIHRDLKSNNIFLHEDNTVKIGDF-sGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKKRDER 
           ________________________________________________________________________________________________________________________ 

           __________________                                                                                                       
 3c4c(A) : PSFPRILAEIEELARELS                                                                                                       
         :                                                                                                                          
 3c4c(B) : PSFPRILAEIEELARELS                                                                                                       
           __________________                                                                                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
32.0
Translation
(A)
-1.1
Closure
(%)
70.6
Bending Residues
( green )
  483 - 484
  504 - 506
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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