Calmodulin (Vertebrate)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin (Vertebrate)
  Conformer 1
(PDB)
1cdl (A)
  Conformer 2
(PDB)
2f2o (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 69 1.75   7 - 75
2 67 1.14   76 - 144

Sequence


           __________________________________________________________________72____________________________________________________ 
 1cdl(A) : TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 
         :                                                                                                                          
 2f2o(A) : TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL--kLTDEEVDEM 
           __________________________________________________________________72____________________________________________________ 

           ______________________________________                                                                                   
 1cdl(A) : IREADIDGDGQVNYEEFVQMMT****************                                                                                   
         :                                                                                                                          
 2f2o(A) : IREADIDGDGQVNYEEFVQMMTAiRNKIRAIGKMARVF                                                                                   
           ______________________________________                                                                                   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
150.1
Translation
(A)
1.5
Closure
(%)
65.1
Bending Residues
( green )
  72 - 80
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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