Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB) 		5k8q (A)
  Conformer 2
(PDB) 		2x0g (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 65 4.58   70 - 70   72 - 143
2 63 0.95   8 - 69   71 - 71

Sequence


           _________________________________________________________________68_____________________________________________________ 
 5k8q(A) : DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKsEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 
         :                                                                                                                          
 2x0g(B) : ****EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMA-----eEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 
           _________________________________________________________________68_____________________________________________________ 

           _______________________                                                                                                  
 5k8q(A) : IREADIDGDGQVNYEEFVQMMTA                                                                                                  
         :                                                                                                                          
 2x0g(B) : IREADIDGDGQVNYEEFVQMM**                                                                                                  
           _______________________                                                                                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		137.7
Translation
(A) 		4.7
Closure
(%) 		94.6
Bending Residues
( green ) 		  68 - 86
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download