Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
5sy1 (C)
  Conformer 2
(PDB)
4anj (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 58 1.41   82 - 145
2 57 3.28   17 - 81

Sequence


           ____________________________________________________________________71__________________________________________________ 
 5sy1(C) : ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEE 
         :                                                                                                                          
 4anj(B) : ****TEEQIAEFKEAFSLFDKDGDGT----eLGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK----dSEEEIREAFRVFDKDGNGFISAAELRHVMT------tDEE 
           ____________________________________________________________________70__________________________________________________ 

           ___________________________                                                                                              
 5sy1(C) : VDEMIREADIDGDGQVNYEEFVTMMTS                                                                                              
         :                                                                                                                          
 4anj(B) : VDEMIREADIDGDGQVNYEEFVTMMT*                                                                                              
           ___________________________                                                                                              

Morph

Morph animation in progress.
Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
163.2
Translation
(A)
-5.0
Closure
(%)
76.8
Bending Residues
( green )
  71 - 83
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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