Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
5sy1 (C)
  Conformer 2
(PDB)
3hr4 (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 70 2.34   77 - 146
2 66 0.78   11 - 76

Sequence


           _____________________________________________________________________72_________________________________________________ 
 5sy1(C) : ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEE 
         :                                                                                                                          
 3hr4(D) : **QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEE 
           _____________________________________________________________________71_________________________________________________ 

           ___________________________                                                                                              
 5sy1(C) : VDEMIREADIDGDGQVNYEEFVTMMTS                                                                                              
         :                                                                                                                          
 3hr4(D) : VDEMIREADIDGDGQVNYEEFVQMMTA                                                                                              
           ___________________________                                                                                              

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
172.8
Translation
(A)
-4.4
Closure
(%)
72.0
Bending Residues
( green )
  72 - 78
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download