Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
2l53 (A)
  Conformer 2
(PDB)
4dck (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 65 1.28   82 - 146
2 62 1.77   6 - 78

Sequence


           __________________________________________________________________________76____________________________________________ 
 2l53(A) : ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEE 
         :                                                                                                                          
 4dck(B) : ***LTEEQIAEFKEAFSLFD------iTTKELGTVMRSLGQNPTEAELQDMINEV-----gTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEE 
           __________________________________________________________________________77____________________________________________ 

           ____________________________                                                                                             
 2l53(A) : VDEMIREADIDGDGQVNYEEFVQMMTAK                                                                                             
         :                                                                                                                          
 4dck(B) : VDEMIREADIDGDGQVNYEEFVQMMTAK                                                                                             
           ____________________________                                                                                             

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
58.4
Translation
(A)
-6.1
Closure
(%)
94.3
Bending Residues
( green )
  76 - 82
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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