Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
3cln (A)
  Conformer 2
(PDB)
1prw (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 26 0.91   7 - 16   63 - 78
2 46 0.96   17 - 62
3 66 1.16   79 - 145

Sequence


           ______________16____________________________________________62_____________77___________________________________________ 
 3cln(A) : ****TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEE 
         :                                                                                                                          
 1prw(A) : ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGE-lTDEE 
           ______________16____________________________________________62_____________77___________________________________________ 

           ____________________________                                                                                             
 3cln(A) : VDEMIREANIDGDGQVNYEEFVQMMTA*                                                                                             
         :                                                                                                                          
 1prw(A) : VDEMIREADIDGDGQVNYEEFVQMMTAK                                                                                             
           ____________________________                                                                                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
33.1
Translation
(A)
0.6
Closure
(%)
99.0
Bending Residues
( green )
  16 - 18
  62 - 63
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
166.6
Translation
(A)
-2.0
Closure
(%)
85.6
Bending Residues
( green )
  77 - 81
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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