Camp-Dependent Protein Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Camp-Dependent Protein Kinase
  Conformer 1
(PDB)
1ctp (E)
  Conformer 2
(PDB)
2cpk (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 226 1.24   17 - 29   88 - 88   90 - 105   123 - 327
2 95 1.28   30 - 87   89 - 89   106 - 122   328 - 348

Sequence


           _____________________29________________________________________________________87_______________105______________122____ 
 1ctp(E) : KKGSEQESVKEFLAKAKEDFLKKWENPAQNTAHLDQFERIKTLGTGSFGRVMLVKHKETGNHFAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEYSFKDNSNLYMVMEYVPGG 
         :                                                                                                                          
 2cpk(E) : ********VKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGG 
           _____________________29________________________________________________________87_______________105______________122____ 

           ________________________________________________________________________________________________________________________ 
 1ctp(E) : EMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQI 
         :                                                                                                                          
 2cpk(E) : EMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQI 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________316__________________________________                 
 1ctp(E) : YEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKf---------DDYEEEEIRVS--eKCGKEFSEF                 
         :                                                                                                                          
 2cpk(E) : YEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVSINEKCGKEFTEF                 
           ___________________________________________________________________316__________________________________                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.9
Translation
(A)
1.0
Closure
(%)
95.4
Bending Residues
( green )
  29 - 30
  87 - 96
  105 - 106
  122 - 123
  316 - 332
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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