C-Like Protease

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name C-Like Protease
  Conformer 1
(PDB)
4in2 (A)
  Conformer 2
(PDB)
4inq (A)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 25 8.26   33 - 57
2 21 6.11   12 - 32

Sequence


           ________________________________________________________________________________________________________________________ 
 4in2(A) : ************************************************************************************************************************ 
         :                                                                                                                          
 4inq(A) : KSVTRRNDIPEAAASPPSLLSFLRKNVGKDLSSIAMPVTSNEPISILQLISETFEYAPLLTKATQRPDPITFVSAFAISFLSIYRDKTRTLRKPFNPLLAETFELIREDMGFRLISEKVS 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4in2(A) : ************************************************************************************************************************ 
         :                                                                                                                          
 4inq(A) : HRPPVFAFFAEHLDWECSYTVTPSQKFWGKSIELNNEGILRLKFKTTGELFEWTQPTTILKNLIAGERYMEPVNEFEVHSSKGDKSHILFDKAGMFSGRSEGFKVSIIPPPSSNRKKETL 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________32______________________________________________________________ 
 4in2(A) : *************************EAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVVPTGVKEFFGEPLSSIAIHQAGEFTQFRFSKKrPDLTGvLEEGCPEGTVCSVLIKRDSGELLP 
         :                                                                                                                          
 4inq(A) : AGKWTQSLANETTHETIWEVGDLVSNPKKKYGFTKFTANLNEITEIEKGNLPPTDSRLRPDIRAYEEGNVDKAEEWKLKLEQLQRERRNKGQDVEP-KYFEKVSKNEWKYITGPKSYWER 
           _______________________________________________________922______________________________________________________________ 

           _________________________________________________________________________                                                
 4in2(A) : LAVRgAIASrIQGRLVHGQSGlLTlGTIPGDCGAPYVHKRGNDWVVCGVHAAATKSGNTVVCAVQAGEGETAL                                                
         :                                                                                                                          
 4inq(A) : RKKHDWSDISQLW************************************************************                                                
           _________________________________________________________________________                                                

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
154.6
Translation
(A)
9.5
Closure
(%)
12.4
Bending Residues
( green )
  32 - 33
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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