Cyclopropane-Fatty-Acyl-Phospholipid Synthase 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cyclopropane-Fatty-Acyl-Phospholipid Synthase 1
  Conformer 1
(PDB) 		1kp9 (A)
  Conformer 2
(PDB) 		1kpi (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 244 2.19   21 - 180   201 - 284
2 20 1.91   181 - 200

Sequence


           ________________________________________________________________________________________________________________________ 
 1kp9(A) : **************LSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGW 
         :                                                                                                                          
 1kpi(A) : QLKPPVEAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGW 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________173________________________200____________________________________ 
 1kp9(A) : EQFDEPVDRIVSIGAFEHF-------GHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQPHYAKTL 
         :                                                                                                                          
 1kpi(A) : EEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRIGANYVPTL 
           ______________________________________________________188________________________215____________________________________ 

           ___________________________________________________                                                                      
 1kp9(A) : DLWSAALQANKGQAIALQSEEVYERYMKYLTGCAEMFRIGYIDVNQFTCQK                                                                      
         :                                                                                                                          
 1kpi(A) : NAWADALQAHKDEAIALKGQETCDIYMHYLRGCSDLFRDKYTDVCQFTLVK                                                                      
           ___________________________________________________                                                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		83.1
Translation
(A) 		7.7
Closure
(%) 		64.5
Bending Residues
( green ) 		  173 - 183
  200 - 205
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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