3-Dehydroquinate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 3-Dehydroquinate Synthase
  Conformer 1
(PDB)
1nvf (A)
  Conformer 2
(PDB)
1nua (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 202 1.27   7 - 140   143 - 143   145 - 184   213 - 217   221 - 236   249 - 254
2 173 0.94   141 - 142   144 - 144   185 - 212   218 - 220   237 - 248   255 - 389

Sequence


           ________________________________________________________________________________________________________________________ 
 1nvf(A) : *PTKISILGRESIIADFGLWRNYVAKDLISDCSSTTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTG 
         :                                                                                                                          
 1nua(A) : NPTKISILGRESIIADFGLWRNYVAKDLISDCSSTTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTG 
           ________________________________________________________________________________________________________________________ 

           _______________140_________________________________________184_________________________212__217________________236______ 
 1nvf(A) : FVASTYMRGVRYVQVPTTLLAMVDSSIGGKTAIDTPLGKNLIGAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEEFTALEENAETILKAVRREVTPGEHRFEGTEEILKAR 
         :                                                                                                                          
 1nua(A) : FVASTYMRGVRYVQVPTTLLAMVDSSIGGKTAIDTPLGKNLIGAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEEFTALEENAETILKAVRREVTPGEHRFEGTEEILKAR 
           _______________140_________________________________________184_________________________212__217________________236______ 

           ___248___254____________________________________________________________________________________________________________ 
 1nvf(A) : ILASARHKAYVVSADEREGGLRNLLNWGHSIGHAIEAILTPQILHGECVAIGMVKEAELARHLGILKGVAVSRIVKCLAAYGLPTSLKDARIRKLTAGKHCSVDQLMFNMALDKKNDGPK 
         :                                                                                                                          
 1nua(A) : ILASARHKAYVVSA----gGLRNLLNWGHSIGHAIEAILTPQILHGECVAIGMVKEAELARHLGILKGVAVSRIVKCLAAYGLPTSLKDARIRKLTAGKHCSVDQLMFNMALD----gPK 
           ___248___254____________________________________________________________________________________________________________ 

           ______________________________                                                                                           
 1nvf(A) : KKIVLLSAIGTPYETRASVVANEDIRVVL*                                                                                           
         :                                                                                                                          
 1nua(A) : KKIVLLSAIGTPYETRASVVANEDIRVVLA                                                                                           
           ______________________________                                                                                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.3
Translation
(A)
-0.2
Closure
(%)
99.5
Bending Residues
( green )
  140 - 145
  184 - 185
  212 - 213
  217 - 218
  220 - 231
  236 - 237
  248 - 249
  254 - 255
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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