1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase
  Conformer 1
(PDB)
1q0q (A)
  Conformer 2
(PDB)
2egh (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 135 0.65   24 - 26   131 - 133   149 - 185   211 - 212   227 - 274   279 - 281   285 - 291   294 - 317   319 - 326
2 149 0.52   3 - 23   27 - 130   134 - 148   275 - 278   282 - 284   292 - 293
3 110 0.74   186 - 210   213 - 226   318 - 318   327 - 396

Sequence


           _____________________23_26______________________________________________________________________________________________ 
 1q0q(A) : MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTI 
         :                                                                                                                          
 2egh(A) : GKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTI 
           _____________________22_25______________________________________________________________________________________________ 

           __125_____133____________148__________________________________185____________________208_______________226______________ 
 1q0q(A) : LLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVSILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFN 
         :                                                                                                                          
 2egh(A) : LLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVSILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFN 
           __124_____132____________147__________________________________184____________________207_______________225______________ 

           _______________________________274_278___284____291_______________________317____324____________________________________ 
 1q0q(A) : ASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPNRVNSGVKPLDFCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTALNAANEITVAAFLAQQIRFTDIAALN 
         :                                                                                                                          
 2egh(A) : ASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPNRVNSGVKPLDFCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTALNAANEITVAAFLAQQIRFTDIAALN 
           _______________________________273_277___283____290_______________________316____323____________________________________ 

           ________________________________________                                                                                 
 1q0q(A) : LSVLEKMDMREPQCVDDVLSVDANAREVARKEVMRLAS**                                                                                 
         :                                                                                                                          
 2egh(A) : LSVLEKMDMREPQCVDDVLSVDANAREVARKEVMRLASSA                                                                                 
           ________________________________________                                                                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.5
Translation
(A)
-0.1
Closure
(%)
98.8
Bending Residues
( green )
  23 - 24
  26 - 27
  125 - 131
  133 - 136
  148 - 149
  274 - 275
  278 - 279
  281 - 282
  284 - 285
  291 - 294
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
9.9
Translation
(A)
0.6
Closure
(%)
49.2
Bending Residues
( green )
  185 - 186
  208 - 216
  226 - 227
  317 - 319
  324 - 327
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Shear

PyMOL Script

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