3-Deoxy-D-Manno-2-Octulosonic Acid Transferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 3-Deoxy-D-Manno-2-Octulosonic Acid Transferase
  Conformer 1
(PDB)
2xcu (C)
  Conformer 2
(PDB)
2xci (C)
  Window Length 15
  Minimum ratio 0.5
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 206 0.24   7 - 178   255 - 259   277 - 280   315 - 327   334 - 345
2 133 0.28   179 - 254   260 - 276   281 - 314   328 - 333

Sequence


           ________________________________________________________________________________________________________________________ 
 2xcu(C) : HMQFEVLKRFFPKESLKNCKGALWVHTASIGEFNTFLPILKELKREHRILLTYFSPRAREYLKTKSDFYDCLHPLPLDNPFSVKRFEELSKPKALIVVEREFWPSLIIFTKVPKILVNAY 
         :                                                                                                                          
 2xci(C) : HMQFEVLKRFFPKESLKNCKGALWVHTASIGEFNTFLPILKELKREHRILLTYFSPRAREYLKTKSDFYDCLHPLPLDNPFSVKRFEELSKPKALIVVEREFWPSLIIFTKVPKILVNAY 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________165__________________________________________________________________________ 
 2xcu(C) : AKGSLIEKILSKKFDLIIMRTQEDVEKFKTFGAKRVFSCGNLKFICQKGKGIKLKGEFIVAGSIHTGEVEIILKAFKEIKKTYSSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEG 
         :                                                                                                                          
 2xci(C) : AKGSLIEKILSKKFDLIIMRTQEDVEKFKTFGAKRVFSCGNLKFICQKGKGIKLKGEFIVAGSIHTGEVEIILKAFKEIKKTYSSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEG 
           ___________________________________________165__________________________________________________________________________ 

           ____________254__259______________276___________________________________314__________327___333___________________        
 2xcu(C) : DVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAGFEVKNETELVTKLTELLSVKKEIKVEEKSREIKGCYLEKLREFLRG        
         :                                                                                                                          
 2xci(C) : DVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAGFEVKNETELVTKLTELLSVKKEIKVEEKSREIKGCYLEKLREFLRG        
           ____________254__259______________276___________________________________314__________327___333___________________        

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
1.5
Translation
(A)
-0.1
Closure
(%)
23.3
Bending Residues
( green )
  165 - 179
  254 - 255
  259 - 260
  276 - 281
  314 - 315
  327 - 328
  333 - 337
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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