D-Glyceraldehyde-3-Phosphate Dehydrogenase 4 (E.C.1.2.1.12)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name D-Glyceraldehyde-3-Phosphate Dehydrogenase 4 (E.C.1.2.1.12)
  Conformer 1
(PDB)
2gd1 (O)
  Conformer 2
(PDB)
1nq5 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 189 0.48   36 - 36   38 - 55   59 - 62   65 - 69   154 - 214   219 - 288   290 - 320
2 141 0.5   2 - 34   37 - 37   56 - 58   63 - 64   70 - 153   215 - 218   289 - 289   321 - 331

Sequence


           _______________________________32____________________55____________69___________________________________________________ 
 2gd1(O) : AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISA 
         :                                                                                                                          
 1nq5(A) : AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISA 
           _______________________________32____________________55____________69___________________________________________________ 

           ________________________________153_________________________________________________________214_218_____________________ 
 2gd1(O) : PAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSV 
         :                                                                                                                          
 1nq5(A) : PAKNEDITIVMGVNQDKYDPKAHHVISNASSTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSV 
           ________________________________153_________________________________________________________214_218_____________________ 

           ______________________________________________288_____________________________320_____________                           
 2gd1(O) : VDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL                           
         :                                                                                                                          
 1nq5(A) : VDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL                           
           ______________________________________________288_____________________________320_____________                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.3
Translation
(A)
-0.1
Closure
(%)
70.1
Bending Residues
( green )
  32 - 38
  55 - 65
  69 - 70
  153 - 154
  214 - 215
  218 - 219
  288 - 290
  320 - 321
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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