Dihydrodipicolinate Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dihydrodipicolinate Reductase
  Conformer 1
(PDB)
3qy9 (A)
  Conformer 2
(PDB)
3qy9 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 125 1.26   2 - 105   216 - 238
2 110 0.52   106 - 215

Sequence


           _______________________________________________________________________________________________________105______________ 
 3qy9(A) : SMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPK--tPYQQYQHIADVKGADVAIDFSNPNLLFPLLDEDFHLPLVVATTGEKEKLLNKLDELSQNMPVFFSANMSYGVHALTKILAA 
         :                                                                                                                          
 3qy9(B) : SMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQHIADVKGADVAIDFSNPNLLFPLLDEDFHLPLVVATTGEKEKLLNKLDELSQNMPVFFSANMSYGVHALTKILAA 
           _______________________________________________________________________________________________________105______________ 

           ___________________________________________________________________________________________213__________________________ 
 3qy9(A) : AVPLLDDFDIELTEAHHNKKVDAPSGTLEKLYDVIVSLKENVTPVYDRHELNEKRQPQDIGIHSIRGGTIVGEHEVLFAGTDETIQITHRAQSKDIFANGAIQAAERLVNKPNGFYTFDN 
         :                                                                                                                          
 3qy9(B) : AVPLLDDFDIELTEAHHNKKVDAPSGTLEKLYDVIVSLKENVTPVYDRHELNEKRQPQDIGIHSIRGGTIVGEHEVLFAGTDETIQITHRAQSKDIFANGAIQAAERLVNKPNGFYTFDN 
           ___________________________________________________________________________________________213__________________________ 

           _                                                                                                                        
 3qy9(A) : L                                                                                                                        
         :                                                                                                                          
 3qy9(B) : L                                                                                                                        
           _                                                                                                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
19.8
Translation
(A)
0.6
Closure
(%)
55.9
Bending Residues
( green )
  105 - 106
  213 - 216
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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