D-Methionine-Binding Lipoprotein Metq

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name D-Methionine-Binding Lipoprotein Metq
  Conformer 1
(PDB) 		4yah (X)
  Conformer 2
(PDB) 		6cvl (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 112 1.06   115 - 225   227 - 227
2 110 1.19   36 - 114   226 - 226   228 - 257

Sequence


           ___________________________________________________________________________________114__________________________________ 
 4yah(X) : DPNHIKVGVIVGAEQQVAEVAQKVAKDKYGLDVELVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQLKDRGYKLVAVGNTFVYPIAGYSKKIKSLDELQDGSQVAVPNDPTNLGRSLLL 
         :                                                                                                                          
 6cvl(E) : *****KVGVIVGAEQQVAEVAQKVAKDKYGLDVELVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQLKDRGYKLVAVGNTFVYPIAGYSKKIKSLDELQDGSQVAVPNDPTNLGRSLLL 
           ___________________________________________________________________________________114__________________________________ 

           __________________________________________________________________________225___________________________________________ 
 4yah(X) : LQKVGLIKLKDGVGLLPTVLDVVENPKNLKIVELEAPQLPRSLDDAQIALAVINTTYASQIGLTPAKDGIFVEDKESPYVNLIVTREDNKDAENVKKFVQAYQSDEVYEAANKVFNGGAV 
         :                                                                                                                          
 6cvl(E) : LQKVGLIKLKDGVGLLPTVLDVVENPKNLKIVELEAPQLPRSLDDAQIALAVINTTYASQIGLTPAKDGIFVEDKESPYVALIVTREDNKDAENVKKFVQAYQSDEVYEAA********* 
           __________________________________________________________________________225___________________________________________ 

           _____                                                                                                                    
 4yah(X) : KGWLE                                                                                                                    
         :                                                                                                                          
 6cvl(E) : *****                                                                                                                    
           _____                                                                                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		23.2
Translation
(A) 		0.2
Closure
(%) 		10.3
Bending Residues
( green ) 		  114 - 115
  225 - 228
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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