DNA Damage-Binding Protein 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name DNA Damage-Binding Protein 1
  Conformer 1
(PDB)
6dsz (B)
  Conformer 2
(PDB)
5hxb (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 747 1.66   4 - 393   709 - 1138
2 285 1.25   394 - 708

Sequence


           ________________________________________________________________________________________________________________________ 
 6dsz(B) : MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQ-iDIITRAHGNVQDRIGRPSETGIIGI 
         :                                                                                                                          
 5hxb(B) : *SYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTA--lRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQsIDIITRAHGNVQDRIGRPSETGIIGI 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 6dsz(B) : IDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGD 
         :                                                                                                                          
 5hxb(B) : IDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGD 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 6dsz(B) : KYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMC 
         :                                                                                                                          
 5hxb(B) : KYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEK--------tLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLN-----qGSYVVAMETFTNLGPIVDMC 
           ________________________________________________________________________________________________________________________ 

           __________________________393___________________________________________________________________________________________ 
 6dsz(B) : VVDLrQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASI----iKGLWPLRSr-ETDDTLVLSFVGQTRVLMLNGEE-----lMGFVDDq-TFFCGNVAHQQLIQITSASVRLVSQEPKAL 
         :                                                                                                                          
 5hxb(B) : VVD--qGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPeTDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKAL 
           __________________________393___________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 6dsz(B) : VSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITP---gLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFE--hYLLCALGD 
         :                                                                                                                          
 5hxb(B) : VSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLsNGLSPLCAIGLWTDISARILKLPSFEL-hKEMLGG-iIPRSILMTTFESSHYLLCALGD 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________________705________________________ 
 6dsz(B) : GALFYFGLNIETGLL-dRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI-----lVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEV 
         :                                                                                                                          
 5hxb(B) : GALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRS-sTTNVFACSDRPTVIYSnHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEV 
           _____________________________________________________________________________________________705________________________ 

           ________________________________________________________________________________________________________________________ 
 6dsz(B) : SQCFGVLSSRIEVQDgTTALRPSASTQALSSSVSSSKLFSSsFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQ 
         :                                                                                                                          
 5hxb(B) : SQCFGVLSSRIEVQD-tTALRPSASTQALSSSVSSSKL------eEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQ 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 6dsz(B) : TVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRT---hYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQK 
         :                                                                                                                          
 5hxb(B) : TVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQK 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 6dsz(B) : DSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQpTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQ 
         :                                                                                                                          
 5hxb(B) : D------eERQHLQEVGLFHLGEFVNVFCHGSLVMQNtQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHT--kTEPATGFIDGDLIESFLDISRPKMQ 
           ________________________________________________________________________________________________________________________ 

           _______________________________                                                                                          
 6dsz(B) : EVVa-------------DDLIKVVEELTRIH                                                                                          
         :                                                                                                                          
 5hxb(B) : EVVANLQYDDGkREATADDLIKVVEELTRIH                                                                                          
           _______________________________                                                                                          

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
75.1
Translation
(A)
-0.4
Closure
(%)
13.0
Bending Residues
( green )
  393 - 394
  705 - 710
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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