DNA Mismatch Repair Protein Muts

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name DNA Mismatch Repair Protein Muts
  Conformer 1
(PDB)
1nne (A)
  Conformer 2
(PDB)
1nne (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 566 1.12   91 - 92   120 - 226   229 - 405   409 - 410   418 - 420   482 - 762
2 110 0.71   4 - 90   93 - 119   227 - 228
3 71 0.92   406 - 408   411 - 417   421 - 481

Sequence


           ________________________________________________________________________________________90__________________________119_ 
 1nne(A) : MEGMLKGEGPGPLPPLLQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTSKDFTTPMAGIPLRAFEAYAERLLKMGFRLAVADQVEPAEEAEGLVRREVTQLLTPGT 
         :                                                                                                                          
 1nne(B) : MEGMLKGEGPGPLPPLLQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTSKDFTTPMAGIPLRAFEAYAERLLKMGFRLAVADQVEP------lVRREVTQLLTPGT 
           ______________________________________________________________________________________1090_________________________1119_ 

           _______________________________________________________________________________________________________226______________ 
 1nne(A) : LLQESLLPREANYLAAIATGDGWGLAFLDVSTGEFKGTVLKSKSALYDELFRHRPAEVLLAPELLENGAFLDEFRKRFPVMLSEAPFEPEGEGPLALRRARGALLAYAQRTQGGALSLQP 
         :                                                                                                                          
 1nne(B) : LLQESLLPREANYLAAIATGDGWGLAFLDVSTGEFKGTVLKSKSALYDELFRHRPAEVLLAPELLENGAFLDEFRKRFPVMLSEAPFEPEGEGPLALRRARGALLAYAQRTQGGALSLQP 
           ______________________________________________________________________________________________________1226______________ 

           ________________________________________________________________________________________________________________________ 
 1nne(A) : FRFYDPGAFMRLPEATLRALEVFEPLRGQDTLFSVLDETRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVRRLLYRLADLERLATRLELGRASPKDLGALRRSLQILP 
         :                                                                                                                          
 1nne(B) : FRFYDPGAFMRLPEATLRALEVFEPLRGQDTLFSVLDETRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVRRLLYRLADLERLATRLELGRASPKDLGALRRSLQILP 
           ________________________________________________________________________________________________________________________ 

           __________________________________________405_________417_____________________________________________________________48 
 1nne(A) : ELRALLGEEVGLPDLSPLKEELEAALVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYFLELEERERERTGIPTLKVGYNAVFGYYLEVTRPYYERVPKEYRPVQTLKDRQRYTLPE 
         :                                                                                                                          
 1nne(B) : ELRALLGEEVGLPDLSPLKEELEAALVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYFLELEERERERTGIPTLKVGYNAVFGYYLEVTRPYYERVPKEYRPVQTLKDRQRYTLPE 
           _________________________________________1405________1417____________________________________________________________148 

           1_______________________________________________________________________________________________________________________ 
 1nne(A) : MKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVRYGYVRPRFGDRLQIRAGRHPVVERRTEFVPNDLEMAHELVLITGPNMAGKSTFLRQTALIA 
         :                                                                                                                          
 1nne(B) : MKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVRYGYVRPRFGDRLQIRAGRHPVVERRTEFVPNDLEMAHELVLITGPNMAGKSTFLRQTALIA 
           1_______________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1nne(A) : LLAQVGSFVPAEEAHLPLFDGIYTRIGA------gKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTALGLPRLKNLHVAAREEAG 
         :                                                                                                                          
 1nne(B) : LLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTALGLPRLKNLHVAAREEAG 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________                                                                            
 1nne(A) : GLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARALLQAMAAR                                                                            
         :                                                                                                                          
 1nne(B) : GLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARALLQAMAAR                                                                            
           _____________________________________________                                                                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.7
Translation
(A)
0.6
Closure
(%)
6.4
Bending Residues
( green )
  90 - 93
  119 - 120
  226 - 229
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
10.3
Translation
(A)
-1.3
Closure
(%)
55.4
Bending Residues
( green )
  405 - 406
  408 - 411
  417 - 418
  420 - 421
  481 - 482
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Shear

PyMOL Script

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