60 Kda Chaperonin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 60 Kda Chaperonin
  Conformer 1
(PDB)
1xck (A)
  Conformer 2
(PDB)
1sx4 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 90 1.45   137 - 191   374 - 408
2 248 1.25   4 - 136   409 - 523
3 182 0.57   192 - 373

Sequence


           ________________________________________________________________________________________________________________________ 
 1xck(A) : AAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGID 
         :                                                                                                                          
 1sx4(A) : AAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGID 
           ________________________________________________________________________________________________________________________ 

           ____________136__________________________________________________189____________________________________________________ 
 1xck(A) : KAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA 
         :                                                                                                                          
 1sx4(A) : KAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA 
           ____________136__________________________________________________189____________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1xck(A) : KAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYD 
         :                                                                                                                          
 1sx4(A) : KAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYD 
           ________________________________________________________________________________________________________________________ 

           ________372_________________________________408_________________________________________________________________________ 
 1xck(A) : REKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAA 
         :                                                                                                                          
 1sx4(A) : REKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAA 
           ________372_________________________________408_________________________________________________________________________ 

           ____________________________________________                                                                             
 1xck(A) : TEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLP                                                                             
         :                                                                                                                          
 1sx4(A) : TEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLP                                                                             
           ____________________________________________                                                                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
30.6
Translation
(A)
0.8
Closure
(%)
96.3
Bending Residues
( green )
  136 - 137
  408 - 409
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
87.0
Translation
(A)
0.5
Closure
(%)
3.6
Bending Residues
( green )
  189 - 194
  372 - 375
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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