2-Methylcitrate Synthase, Mitochondrial

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 2-Methylcitrate Synthase, Mitochondrial
  Conformer 1
(PDB)
5uqo (A)
  Conformer 2
(PDB)
5uqr (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 322 0.63   33 - 82   95 - 96   98 - 306   351 - 351   360 - 365   368 - 374   400 - 403   419 - 422   424 - 462
2 108 1.04   83 - 94   97 - 97   307 - 350   352 - 359   366 - 367   375 - 399   404 - 418   423 - 423

Sequence


           ______________________________________________________82__________94____________________________________________________ 
 5uqo(A) : ****AEPDLKTALKAVIPAKRELFKQVKERSDEVIGEVKVANVIGGMRGLKSMLWEGSVLDPEEGIRFHGKTIKDCQKELPKGTSGTEMLPEAMFWLLLTGQVPSTNQVRAFSRELAEQS 
         :                                                                                                                          
 5uqr(A) : SGSTAEPDLKTALKAVIPAKRELFKQVKERSDEVIGEVKVANVIGGMRGLKSMLWEGSVLDPEEGIRFHGKTIKDCQKELPKGTSGTEMLPEAMFWLLLTGQVPSTNQVRAFSRELAEQS 
           ______________________________________________________82__________94____________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5uqo(A) : HLPQHILDLIKSFPRSMHPMTQLSIAVAALNTESKFAKAYEKGLSKADYWEPTFDDSISLLAKIPRVAALVFRPDEVDQVGTQALDASQDWSYNFAELLGKGGKENQDFHDLLRLYLALH 
         :                                                                                                                          
 5uqr(A) : HLPQHILDLIKSFPRSMHPMTQLSIAVAALNTESKFAKAYEKGLSKADYWEPTFDDSISLLAKIPRVAALVFRPDEVDQVGTQALDASQDWSYNFAELLGKGGKENQDFHDLLRLYLALH 
           ________________________________________________________________________________________________________________________ 

           ___________________________________304___________________________________________350____________________________________ 
 5uqo(A) : GDHEGGNVSAHATHLVGSALSDPFLSYSAGLLGLAGPLHGLAAQEVLRWILAMQDKIGTKFTDDDVRNYLWDTLKSGRVVPGYGHGVLRKPDPRFQALMDFAATRPDVLANPVFQLVKKN 
         :                                                                                                                          
 5uqr(A) : GDHEGGNVSAHATHLVGSALSDPFLSYSAGLLGLAGPLHGLAAQEVLRWILAMQDKIGTKFTDDDVRNYLWDTLKSGRVVPGYGHGVLRKPDPRFQALMDFAATRPDVLANPVFQLVKKN 
           ___________________________________304___________________________________________350____________________________________ 

           __________399________________418_______________________________________________                                          
 5uqo(A) : SEIAPAVLTEHGKTKNPHPNVDAASGVLFYHYGFQQPLYYTVTFGVSRALGPLVQLIWDRALGLPIERPKSINLLGLK*                                          
         :                                                                                                                          
 5uqr(A) : SEIAPAVLTEHGKTKNPHPNVDAASGVLFYHYGFQQPLYYTVTFGVSRALGPLVQLIWDRALGLPIERPKSINLLGLKK                                          
           __________399________________418_______________________________________________                                          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.8
Translation
(A)
0.3
Closure
(%)
30.2
Bending Residues
( green )
  82 - 83
  94 - 98
  304 - 308
  350 - 375
  399 - 404
  418 - 427
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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