3-Phosphoglycerate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 3-Phosphoglycerate Kinase
  Conformer 1
(PDB)
13pk (A)
  Conformer 2
(PDB)
16pk  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 232 1.97   7 - 204   222 - 232   395 - 417
2 179 0.87   205 - 221   233 - 394

Sequence


           ________________________________________________________________________________________________________________________ 
 13pk(A) : EKKSINECDLKGKKVLIRVDFNVPVKNGKITNDYRIRSALPTLKKVLTEGGSCVLMSHLGRPKGIPMAQAGKIRSTGGVPGFQQKATLKPVAKRLSELLLRPVTFAPDCLNAADVVSKMS 
         :                                                                                                                          
 16pk    : EKKSINECDLKGKKVLIRVDFNVPVKNGKITNDYRIRSALPTLKKVLTEGGSCVLMSHLGRPKGIPMAQAGKIRSTGGVPGFQQKATLKPVAKRLSELLLRPVTFAPDCLNAADVVSKMS 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________________202___________216_____________232____________ 
 13pk(A) : PGDVVLLENVRFYKEEGSKKAKDREAMAKILASYGDVYISDAFGTAHRDSATMTGIPKILGNGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMA 
         :                                                                                                                          
 16pk    : PGDVVLLENVRFYKEEGSKKAKDREAMAKILASYGDVYISDAFGTAHRDSATMTGIPKILGNGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMA 
           ___________________________________________________________________________202___________216_____________232____________ 

           ________________________________________________________________________________________________________________________ 
 13pk(A) : YTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGT 
         :                                                                                                                          
 16pk    : YTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGT 
           ________________________________________________________________________________________________________________________ 

           ___________________________394_________________________                                                                  
 13pk(A) : HEHGLMSIIGGGDSASAAELSGEAKRMSHVSTGGGASLELLEGKTLPGVTVLDDK                                                                  
         :                                                                                                                          
 16pk    : HEHGLMSIIGGGDSASAAELSGEAKRMSHVSTGGGASLELLEGKTLPGVTVLDDK                                                                  
           ___________________________394_________________________                                                                  

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
23.4
Translation
(A)
-2.8
Closure
(%)
88.3
Bending Residues
( green )
  202 - 205
  216 - 229
  232 - 233
  394 - 397
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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