3-Phosphoglycerate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 3-Phosphoglycerate Kinase
  Conformer 1
(PDB)
1qpg (A)
  Conformer 2
(PDB)
13pk (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 204 3.44   6 - 197   219 - 221   391 - 412
2 188 1.62   198 - 218   222 - 390

Sequence


           ________________________________________________________________________________________________________________________ 
 1qpg(A) : SLSSKLSVQDLDLKDKRVFIRVDFNVPLDGKKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGQPNGE--------RN--------EKYSLAPVAKELQSLLGKDVTFLNDCVGPEVEA 
         :                                                                                                                          
 13pk(A) : ***EKKSINECDLKGKKVLIRVDFNVPVKNGKITNDYRIRSALPTLKKVLTEGGS-CVLMSHLGRPKGIPMAQAGKIRSTGGVPGFQQKATLKPVAKRLSELLLRPVTFAPDCLN--AAD 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________________________________197_____________213_____221_ 
 1qpg(A) : AVKASAPGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYINDAFGTAHRAHSSMVGFD--LPQRAAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLID 
         :                                                                                                                          
 13pk(A) : VVSKMSPGDVVLLENVRFY-KEEGSKKAK------DREAMAKI---LASYGDVYISDAFGTAHRDSATMTGIPKILGNGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQLLD 
           ____________________________________________________________________________________________203_____________219_____227_ 

           ________________________________________________________________________________________________________________________ 
 1qpg(A) : NLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFAATVAKAKTIVWNGPPGVFEF 
         :                                                                                                                          
 13pk(A) : NMLQRIDYLLIGGAMAYTFLKA-QGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPIDHVCHTEFKA-VDSPLITEDQNIPEGHMALDIGPKTIEKYVQTIGKCKSAIWNGPMGVFEM 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________390_________________________                                               
 1qpg(A) : EKFAAGTKALLDEVVKSSAA-GNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFLSEKK                                               
         :                                                                                                                          
 13pk(A) : VPYSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEAKRMSHVSTGGGASLELLEGKTLPGVTVLDDK*                                               
           ______________________________________________395_________________________                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
29.4
Translation
(A)
-1.0
Closure
(%)
99.6
Bending Residues
( green )
  197 - 198
  213 - 219
  221 - 222
  390 - 391
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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